STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57682.1Putative uncharacterized protein. (116 aa)    
Predicted Functional Partners:
CED57683.1
Putative uncharacterized CBS domain protein.
 
    0.960
CED57680.1
Membrane protein.
 
     0.933
CED57681.1
Membrane protein.
 
     0.933
amtB
Ammonium transporter.
  
 
 0.930
ntrB
Nitrogen regulation protein NtrB.
  
 
 0.762
argA
Amino-acid acetyltransferase.
   
 
 0.738
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.726
CED56814.1
Putative regulator, GGDEF family protein.
   
 
 0.561
CED56834.1
Putative regulator, GGDEF family protein.
   
 
 0.561
CED56844.1
Putative regulator, GGDEF family protein.
   
 
 0.561
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.