STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57689.1ABC transporter, ATP binding protein. (254 aa)    
Predicted Functional Partners:
CED57688.1
ABC-3 transporter protein, membrane component.
 
 0.997
CED57690.1
ABC transporter, periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.995
znuB
High-affinity zinc uptake system membrane protein ZnuB.
 
 0.980
CED57687.1
Membrane protein.
 
  
 0.963
znuA
High-affinity zinc uptake system protein ZnuA precursor.
 
 
 0.958
znuC
High-affinity zinc uptake system atp-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 
0.915
CED57692.1
Putative exported protein.
 
    0.907
CED71610.1
ABC 3 transport family protein.
 
 
 0.862
CED57691.1
Putative membrane protein.
  
    0.811
CED57693.1
Putative membrane protein.
 
     0.729
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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