STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57694.1Putative exported protein. (174 aa)    
Predicted Functional Partners:
CED57693.1
Putative membrane protein.
 
  
 0.982
CED57695.1
Membrane protein.
 
   
 0.948
CED57692.1
Putative exported protein.
 
     0.864
CED57687.1
Membrane protein.
 
     0.800
CED57690.1
ABC transporter, periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
     0.682
CED57689.1
ABC transporter, ATP binding protein.
 
     0.666
apbE
Thiamine biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.664
CED57691.1
Putative membrane protein.
       0.659
CED57688.1
ABC-3 transporter protein, membrane component.
 
     0.643
CED57696.1
Putative exported protein.
 
     0.627
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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