STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57762.1Membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (398 aa)    
Predicted Functional Partners:
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.992
CED71237.1
ABC transporter, permease protein.
 
 
 0.883
CED71238.1
ABC transporter, permease protein.
 
 
 0.868
CED57905.1
Integral membrane protein, multidrug efflux pump.
 
   0.738
CED71239.1
ABC transporter, ATP-binding protein.
 
 
 0.728
CED72644.1
Putative integral membrane component of multidrug efflux system; Similar to Escherichia coli Acriflavine resistance protein F AcrF UniProt:P24181 (1034 aa) blastp scores: E()=0e-130; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.713
CED71748.1
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.692
CED57187.1
Transporter, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.606
CED56804.1
Integral membrane protein, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.603
CED57917.1
Outer membrane efflux protein.
 
 
 0.581
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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