STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57767.1Putative uncharacterized protein, cupin superfamily. (111 aa)    
Predicted Functional Partners:
CED57766.1
Putative heparinase.
 
   
 0.888
CED57765.1
Putative heparinase.
 
   
 0.887
CED57768.1
Putative carbohydrate kinase, pfkB family.
 
   
 0.842
CED57763.1
Putative exported alginate lyase.
  
   
 0.744
CED57752.1
Putative exported protein.
 
    0.649
CED57769.1
Gluconate permease.
     
 0.616
CED71695.1
Transcription regulator, GntR family.
  
  
 0.595
motA
Sodium-driven polar flagellar protein MotA.
    
   0.492
CED57770.1
Putative Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
   
 0.490
npdA
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.477
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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