STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frpNADPH-flavin oxidoreductase; Belongs to the flavin oxidoreductase frp family. (240 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.910
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.631
CED70440.1
AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase.
 
 
 
 0.626
CED57242.1
Membrane protein.
  
  
 0.588
CED57243.1
Membrane protein.
  
  
 0.588
CED70519.1
ABC transporter, integral membrane protein.
  
  
 0.588
CED71902.1
ABC-2 type transporter, ATP-binding protein.
  
  
 0.588
menE
O-succinylbenzoate-CoA ligase.
   
 
 0.573
fadD
long-chain-fatty-acid-CoA ligase.
   
 
 0.573
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.504
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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