STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
frpNADPH-flavin oxidoreductase; Belongs to the flavin oxidoreductase frp family. (240 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.914
ubiX
Probable aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
  
  
  0.914
CED70440.1
AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase.
 
 
 
 0.602
gltB
Glutamate synthase, large subunit.
     
 0.580
rimK
Ribosomal protein S6 modification protein; Belongs to the RimK family.
  
  
 0.567
CED56846.1
Nitroreductase.
      
 0.558
menE
O-succinylbenzoate-CoA ligase.
   
 
 0.545
fadD
long-chain-fatty-acid-CoA ligase.
   
 
 0.545
CED57242.1
Membrane protein.
  
  
 0.529
CED57243.1
Membrane protein.
  
  
 0.529
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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