STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57774.1Putative iron ABC transporter, ATP-binding protein. (262 aa)    
Predicted Functional Partners:
CED57776.1
Putative iron ABC transporter, plasmic binding protein.
 
 
 0.992
CED57775.1
Putative iron ABC transporter, membrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.991
huvC
Heme transporter protein HuvC, transmembrane permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.962
pvuD
Ferric vibrioferrin transport system permease protein PvuD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.961
pvuC
Ferric vibrioferrin transport system permease protein PvuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.961
huvB
Heme transporter protein HuvB, putative periplasmic binding protein.
 
 
 0.800
CED57547.1
Ferric siderophore transport protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.559
CED70956.1
ABC transporter, ATP-binding protein.
 
  
0.501
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
 
  
0.493
pvuB
Ferric vibrioferrin-binding periplasmic protein PvuB.
  
  
 0.493
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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