STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57800.1Outer membrane protein, OmpA family. (277 aa)    
Predicted Functional Partners:
CED57801.1
Polysaccharide biosynthesis/export protein.
 
   0.861
CED57802.1
Putative capsular polysaccharide synthesis protein.
       0.811
CED57803.1
Response regulator.
     
 0.811
ompA
Outer membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.768
CED57799.1
Putative anti-sigma factor antagonist.
 
     0.753
CED57918.1
Outer membrane protein OmpA family.
  
     0.729
CED57201.1
Outer membrane protein, OmpA family.
  
     0.689
CED57804.1
Sensor protein.
   
 
 0.671
luxO
Two-component response regulator, transcriptional regulatory protein LuxO.
 
    0.612
tolB
TolB protein precursor, periplasmic component; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.539
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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