STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57801.1Polysaccharide biosynthesis/export protein. (702 aa)    
Predicted Functional Partners:
CED57802.1
Putative capsular polysaccharide synthesis protein.
 
 
 0.944
CED57810.1
Putative chain length determinant protein.
 
 
 0.939
CED57799.1
Putative anti-sigma factor antagonist.
 
     0.895
CED57807.1
O-antigen polymerase.
 
  
 0.884
CED57800.1
Outer membrane protein, OmpA family.
 
   0.861
CED57803.1
Response regulator.
 
     0.854
CED57809.1
Glycosyltransferase.
 
  
 0.814
CED57798.1
Putative exported protein.
 
     0.804
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.772
CED71302.1
Polysaccharide biosynthesis protein.
 
  
 0.768
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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