STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57801.1Polysaccharide biosynthesis/export protein. (702 aa)    
Predicted Functional Partners:
CED57810.1
Putative chain length determinant protein.
 
 
 0.955
CED57802.1
Putative capsular polysaccharide synthesis protein.
 
 
 0.949
CED57799.1
Putative anti-sigma factor antagonist.
 
     0.898
CED57800.1
Outer membrane protein, OmpA family.
 
   0.859
CED57807.1
O-antigen polymerase.
 
  
 0.854
CED57803.1
Response regulator.
 
     0.847
CED57809.1
Glycosyltransferase.
 
  
 0.817
CED57798.1
Putative exported protein.
 
   
 0.806
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.790
CED57806.1
Glycosyltransferase.
 
  
 0.778
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.