STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57807.1O-antigen polymerase. (463 aa)    
Predicted Functional Partners:
CED57810.1
Putative chain length determinant protein.
 
  
 0.907
CED57801.1
Polysaccharide biosynthesis/export protein.
 
  
 0.884
CED57809.1
Glycosyltransferase.
 
  
 0.879
CED71302.1
Polysaccharide biosynthesis protein.
 
  
 0.861
CED57806.1
Glycosyltransferase.
 
  
 0.786
CED57813.1
Membrane associated glycosyl transferase.
 
   
 0.782
CED57812.1
Glycosyl transferase.
 
  
 0.751
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.719
CED57808.1
Putative acetyltransferase.
 
     0.703
CED70234.1
Polysaccharide biosynthesis protein.
 
  
 0.686
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.