STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57808.1Putative acetyltransferase. (251 aa)    
Predicted Functional Partners:
CED57809.1
Glycosyltransferase.
 
  
 0.894
CED57810.1
Putative chain length determinant protein.
 
  
 0.889
CED57807.1
O-antigen polymerase.
 
     0.747
CED71302.1
Polysaccharide biosynthesis protein.
 
  
 0.699
rmlC
dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.630
CED57806.1
Glycosyltransferase.
 
  
 0.608
CED57812.1
Glycosyl transferase.
 
  
 0.586
CED57813.1
Membrane associated glycosyl transferase.
 
   
 0.540
CED57802.1
Putative capsular polysaccharide synthesis protein.
 
  
 0.532
CED57801.1
Polysaccharide biosynthesis/export protein.
 
    0.514
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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