STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
CED57825.1Putative uncharacterized hydrolase. (547 aa)    
Predicted Functional Partners:
CED57824.1
Membrane associated CDP-alcohol phosphatidyltransferase.
 
  
 0.959
CED57829.1
Putative membrane-associated phosphatase.
 
  
 0.891
CED71353.1
Putative ferredoxin.
  
   0.639
fdx-2
Ferredoxin.
   
   0.636
CED57826.1
Putative uncharacterized phospholipase.
       0.609
CED56675.1
Putative uncharacterized protein.
  
   0.599
CED70954.1
Putative NAD dependent epimerase.
  
   0.599
CED57827.1
Putative short chain dehydrogenase.
       0.597
CED70476.1
Ubiquinol--cytochrome c reductase, cytochrome C1.
   
  
 0.577
CED57828.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
 
    0.554
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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