STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CED57827.1Putative short chain dehydrogenase. (244 aa)    
Predicted Functional Partners:
CED57826.1
Putative uncharacterized phospholipase.
       0.773
fabG-2
3-oxoacyl-[acyl-carrier protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.684
CED57825.1
Putative uncharacterized hydrolase.
       0.597
CED57824.1
Membrane associated CDP-alcohol phosphatidyltransferase.
  
    0.591
CED57472.1
Putative lipoprotein.
 
  
 0.545
CED70440.1
AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase.
   
 
 0.539
menE
O-succinylbenzoate-CoA ligase.
   
 
 0.539
fadD
long-chain-fatty-acid-CoA ligase.
   
 
 0.539
CED70241.1
Nucleotidyl transferase.
   
 
 0.477
fabG
3-oxoacyl-[acyl-carrier-protein] reductase.
 
 
 
 0.476
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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