STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57850.1ABC transporter, glycine betaine binding protein. (313 aa)    
Predicted Functional Partners:
CED57851.1
ABC transporter, permease.
 
 0.999
CED57852.1
ABC transporter, ATP binding protein.
 
 0.997
proW
Glycine betaine/L-proline transport system permease protein ProW.
 
 0.996
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
 0.992
CED57839.1
ABC-type glycine betaine transport system, substrate binding domain.
  
  
 
0.927
proX
Glycine betaine-binding periplasmic protein.
  
  
  0.916
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
     0.817
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.784
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
   
 0.641
sapA
Peptide transport periplasmic protein precursor SapA.
  
  
  0.474
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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