STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57852.1ABC transporter, ATP binding protein. (395 aa)    
Predicted Functional Partners:
CED57851.1
ABC transporter, permease.
 0.998
CED57850.1
ABC transporter, glycine betaine binding protein.
 
 0.997
proW
Glycine betaine/L-proline transport system permease protein ProW.
 0.995
CED57839.1
ABC-type glycine betaine transport system, substrate binding domain.
 
 0.993
proX
Glycine betaine-binding periplasmic protein.
 
 0.989
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
  
  
 
0.910
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.628
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
   
 0.617
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
   
 0.529
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
   
 
0.478
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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