STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57860.1Inner membrane protein. (300 aa)    
Predicted Functional Partners:
CED57859.1
Membrane protein.
  
    0.727
CED57877.1
Putative exported protein.
  
     0.584
CED72572.1
Inner membrane protein.
  
     0.565
CED71585.1
Putative uncharacterized protein; Belongs to the UPF0267 family.
  
     0.517
alaE
Membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
   
 0.509
CED70749.1
Putative uncharacterized protein.
  
     0.457
CED57858.1
Putative uncharacterized protein.
       0.452
CED57235.1
Putative uncharacterized protein.
  
     0.450
vtsB
Putative type VI secretion protein, MFS transporter VtsB.
  
     0.450
CED57224.1
Putative exported protein.
  
     0.447
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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