STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57868.1ABC transporter, extracellular solute-binding protein. (350 aa)    
Predicted Functional Partners:
CED57871.1
ABC transporter, permease.
  
 0.998
CED57870.1
ABC transporter, permease.
 
 
 0.996
CED57872.1
ABC transport, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.994
CED57869.1
Putative uncharacterized phosphodiesterase.
 
    0.989
CED57873.1
Putative uncharacterized hydrolase.
 
     0.862
CED57442.1
Two component transcriptional regulator.
   
   0.633
fbpB
iron(III) ABC transporter, permease protein.
  
  
 0.614
thiP
Thiamine transport system permease protein ThiP.
  
  
 0.614
CED57727.1
MFS transporter.
 
  
 0.588
glpT
Glycerol-3-phosphate transporter.
 
  
 0.554
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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