STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57869.1Putative uncharacterized phosphodiesterase. (272 aa)    
Predicted Functional Partners:
CED57868.1
ABC transporter, extracellular solute-binding protein.
 
    0.980
CED57870.1
ABC transporter, permease.
 
    0.972
CED57871.1
ABC transporter, permease.
 
    0.956
CED57872.1
ABC transport, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    0.912
CED57873.1
Putative uncharacterized hydrolase.
 
     0.859
CED57867.1
Ferric reductase NAD binding protein.
       0.430
CED57230.1
Putative lipoprotein, may be involved in cell division.
  
     0.409
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.