STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57872.1ABC transport, ATP-binding protein; Belongs to the ABC transporter superfamily. (339 aa)    
Predicted Functional Partners:
CED57871.1
ABC transporter, permease.
 
 
 0.997
CED57868.1
ABC transporter, extracellular solute-binding protein.
 
 
 0.995
CED57870.1
ABC transporter, permease.
 
 
 0.995
CED57869.1
Putative uncharacterized phosphodiesterase.
 
    0.912
potB
Spermidine/putrescine transport system permease protein PotB.
 
 
 0.859
CED57873.1
Putative uncharacterized hydrolase.
  
    0.813
potC
Spermidine/putrescine transport system permease protein PotC.
 
  
 0.810
potD
Spermidine/putrescine-binding periplasmic protein precursor (SPBP); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.710
potD-2
Spermidine/putrescine-binding periplasmic protein precursor (SPBP); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.709
nspS2
Putative norspermidine sensor II.
 
  
 0.694
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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