STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57880.1TPR repeat containing membrane protein. (279 aa)    
Predicted Functional Partners:
ccmF
Cytochrome c-type biogenesis protein CcmF.
  
 
 0.689
ccmF-2
Cytochrome c-type biogenesis protein CcmF.
  
 
 0.689
CED57881.1
Transmembrane transporter protein, LysE family.
       0.529
CED57898.1
Aspartokinase.
 
     0.526
litR
HTH-type luminescence regulator LitR.
  
     0.510
CED71359.1
Putative uncharacterized protein; Potential sRNA.
  
     0.508
nrfF
Cytochrome c biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.474
ccmH
Cytochrome c-type biogenesis protein CcmH precursor; Possible subunit of a heme lyase.
  
  
 0.474
CED56801.1
HTH-type transcriptional regulator, TetR family.
  
     0.452
CED71683.1
Putative exported protein.
  
     0.426
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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