STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57916.1Hemolysin-type calcium-binding protein. (2711 aa)    
Predicted Functional Partners:
CED56818.1
Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family.
  
  
 0.746
CED57919.1
ABC transporter ATP-binding protein.
 
  
 0.738
CED56709.1
Putative uncharacterized protein.
 
 
 0.726
CED56690.1
TonB-dependent receptor.
   
 
 0.717
CED56989.1
TonB-dependent heme receptor.
    
 
 0.701
huvS
Heme receptor.
    
 
 0.701
fliN
Polar flagellar switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.611
CED57414.1
Competence protein.
  
  
 0.603
CED70127.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.538
CED70309.1
Putative glycosyl transferase, family 2.
  
 
 0.531
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.