STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57916.1Hemolysin-type calcium-binding protein. (2711 aa)    
Predicted Functional Partners:
CED56709.1
Putative uncharacterized protein.
 
 
 0.709
CED57919.1
ABC transporter ATP-binding protein.
 
  
 0.696
CED57414.1
Competence protein.
  
  
 0.639
CED56818.1
Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family.
  
  
 0.635
CED56690.1
TonB-dependent receptor.
   
 
 0.579
CED71636.1
Sensor protein, GGDEF family.
  
 
 0.576
CED70127.1
6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
   
 
 0.573
fliN
Polar flagellar switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.558
CED56989.1
TonB-dependent heme receptor.
    
 
 0.557
huvS
Heme receptor.
    
 
 0.557
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.