STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57919.1ABC transporter ATP-binding protein. (704 aa)    
Predicted Functional Partners:
CED57922.1
Secretion protein, HlyD family.
 
 0.993
CED57921.1
Putative exported protein.
 
  
 0.960
CED57920.1
Membrane signal transduction protein.
 
  
 0.914
CED57917.1
Outer membrane efflux protein.
 
  
 0.899
CED57544.1
Ferric siderophore transport protein, utilization protein.
   
   0.853
CED71470.1
ABC transporter ATP-binding protein.
 
 
 
0.783
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.766
vcaM
ABC-type multidrug efflux pump, ATP-binding component.
   
 
0.753
CED57916.1
Hemolysin-type calcium-binding protein.
 
  
 0.738
CED57040.1
Secretion protein, HlyD family.
 
 
 0.735
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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