STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57921.1Putative exported protein. (221 aa)    
Predicted Functional Partners:
CED57920.1
Membrane signal transduction protein.
 
 
 0.969
CED57919.1
ABC transporter ATP-binding protein.
 
  
 0.960
CED57922.1
Secretion protein, HlyD family.
 
  
 0.943
CED57917.1
Outer membrane efflux protein.
 
   
 0.827
CED70191.1
Putative signal transduction protein, GGDEF family.
   
 
 0.695
mshH
Putative membrane associated signaling protein, MshH.
 
 
 
 0.630
CED70186.1
Putative signal transduction protein.
   
 
 0.574
CED57742.1
Membrane associated signaling protein.
   
 
 0.554
CED72408.1
Signaling protein.
   
 
 0.554
CED56978.1
Putative membrane associated regulator, GGDEF family protein.
   
 
 0.528
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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