STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED57921.1Putative exported protein. (221 aa)    
Predicted Functional Partners:
CED57919.1
ABC transporter ATP-binding protein.
 
  
 0.979
CED57920.1
Membrane signal transduction protein.
 
 
 0.979
CED57922.1
Secretion protein, HlyD family.
 
  
 0.962
CED57917.1
Outer membrane efflux protein.
 
   
 0.855
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.510
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.504
cysC-2
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.504
CED71849.1
Membrane protein.
  
     0.461
mshH
Putative membrane associated signaling protein, MshH.
 
 
 
 0.444
CED71405.1
Membrane protein.
  
     0.443
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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