STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57922.1Secretion protein, HlyD family. (463 aa)    
Predicted Functional Partners:
CED57919.1
ABC transporter ATP-binding protein.
 
 0.997
CED57921.1
Putative exported protein.
 
  
 0.962
CED57917.1
Outer membrane efflux protein.
 
 
 0.934
CED57920.1
Membrane signal transduction protein.
 
  
 0.927
macB
ABC transporter, permease; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.725
tolC
Outer membrane protein TolC precursor.
 
 
 0.704
CED71236.1
Outer membrane efflux protein.
 
 
 0.703
CED57245.1
Outer membrane efflux protein.
  
 
 0.570
CED57561.1
HTH-type transcriptional regulator, AraC-family.
 
   
 0.553
CED57395.1
Putative exported protein.
  
 
 0.525
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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