STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED57924.1Putative uncharacterized protein. (190 aa)    
Predicted Functional Partners:
CED71916.1
Putative exported protein.
  
     0.722
CED72566.1
Transposase, IS630 family.
  
     0.714
CED70642.1
Transposase, IS630 family.
  
     0.701
CED56795.1
Transposase, IS630 family.
  
     0.695
CED70643.1
Transposase, IS630 family.
  
     0.664
CED56794.1
Transposase, IS630 family.
  
     0.611
CED71490.1
Putative cyclic nucleotide-binding protein.
  
     0.575
CED72565.1
Transposase, IS630 family.
  
     0.556
CED57292.1
Putative nucleotide-binding protein.
  
     0.539
tmcA
Putative ATPase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
       0.522
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.