STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70105.1Putative amino-acid ABC transporter, permease protein. (223 aa)    
Predicted Functional Partners:
CED70104.1
Putative amino-acid ABC transporter ATP-binding protein.
 0.997
CED70106.1
Putative amino acid ABC transporter, substrate-binding protein.
 0.996
CED57059.1
Amino acid ABC transporter, ATP-binding protein.
 
 0.940
aapP
General L-amino acid transport ATP-binding subunit.
 
 0.938
aotJ
Arginine/ornithine periplasmic binding protein-dependent transporter; Belongs to the bacterial solute-binding protein 3 family.
 
 0.938
CED57057.1
Amino acid ABC transporter, extracellular solute-binding protein.
 
 
 0.827
aotP
Arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component.
     0.804
aapM
General L-amino acid ABC transporter permease protein.
 
 
 
0.674
aapQ
General L-amino acid ABC transporter permease protein.
 
 
0.673
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.550
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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