STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CED70234.1Polysaccharide biosynthesis protein. (396 aa)    
Predicted Functional Partners:
CED70235.1
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.997
neuC
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.969
neuB
Sialic acid synthase.
 
  
 0.939
CED70241.1
Nucleotidyl transferase.
 
  
 0.937
glmU
Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
    
 0.921
neuA
N-acylneuraminate cytidylyltransferase.
 
  
 0.906
CED70239.1
Putative uncharacterized protein.
 
  
 0.890
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.886
CED70243.1
Putative oxidoreductase.
 
   
 0.859
CED70244.1
Putative uncharacterized protein.
 
   
 0.848
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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