STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70235.1Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)    
Predicted Functional Partners:
neuC
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.980
CED70241.1
Nucleotidyl transferase.
 
 
 0.979
CED70234.1
Polysaccharide biosynthesis protein.
 
  
 0.975
neuB
Sialic acid synthase.
 
  
 0.962
neuA
N-acylneuraminate cytidylyltransferase.
 
  
 0.945
CED70243.1
Putative oxidoreductase.
 
  
 0.914
CED70244.1
Putative uncharacterized protein.
 
  
 0.906
CED70239.1
Putative uncharacterized protein.
 
     0.845
CED70236.1
Putative uncharacterized protein.
 
     0.834
CED70240.1
Acetyltransferase, GNAT family.
       0.762
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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