STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70249.123 ribosomal protein. (115 aa)    
Predicted Functional Partners:
epsJ
General secretion pathway protein J.
  
 
 0.552
CED70250.1
HTH-type transcriptional regulator, TetR-family.
       0.507
xpsE
General secretion pathway protein E.
  
 
 0.470
pilB
Type IV pilus assembly protein PilB.
  
 
 0.470
epsE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.470
CED57414.1
Competence protein.
  
  
 0.460
CED70248.1
Putative metallo-beta-lactamase.
       0.460
CED70273.1
General secretion pathway protein F.
  
  
 0.457
pilC
Type IV pilus assembly protein PilC.
  
  
 0.457
mshG
Type IV pilus, MSHA biogenesis protein MshG.
  
  
 0.457
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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