STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wbfUGalactosyl transferase, capsular polysaccharide synthesis enzyme. (182 aa)    
Predicted Functional Partners:
galE-2
UDP-glucose 4-epimerase.
  
 0.980
CED70253.1
Glycosyl transferase.
 
  
 0.895
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.881
CED70252.1
Putative glycosyl transferase.
  
  
 0.828
CED70234.1
Polysaccharide biosynthesis protein.
 
  
 0.701
CED70235.1
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.649
wzxC
Lipopolysaccharide biosynthesis protein.
 
  
 0.643
CED71302.1
Polysaccharide biosynthesis protein.
 
  
 0.639
CED57802.1
Putative capsular polysaccharide synthesis protein.
 
  
 0.635
CED70269.1
Lipopolysaccharide biosynthesis protein, glucosyltransferase.
  
 0.620
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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