STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70256.1Putative outer membrane protein. (739 aa)    
Predicted Functional Partners:
CED70258.1
Putative lipoprotein.
 
  
 0.961
CED70257.1
Putative exported protein.
 
  
 0.955
wcaK
Colanic acid biosynthesis protein.
 
     0.634
rplF
50E ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.550
CED70259.1
Membrane protein.
       0.542
CED70440.1
AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase.
    
 0.507
menE
O-succinylbenzoate-CoA ligase.
    
 0.507
fadD
long-chain-fatty-acid-CoA ligase.
    
 0.507
CED70653.1
Putative uncharacterized protein, YebG family.
  
     0.495
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.494
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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