STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wbfFPeriplasmic polysaccharide export protein. (935 aa)    
Predicted Functional Partners:
wzz
Lipopolysaccharide biosynthesis protein, chain length determinant.
 
 
 0.977
CED70260.1
Putative exported protein.
 
   
 0.861
CED57810.1
Putative chain length determinant protein.
 
 
 0.806
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.790
wzxC
Lipopolysaccharide biosynthesis protein.
  
  
 0.674
wcaK
Colanic acid biosynthesis protein.
  
  
 0.671
CED70269.1
Lipopolysaccharide biosynthesis protein, glucosyltransferase.
  
  
 0.665
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT.
  
  
 0.651
kpsM
Capsular polysaccharide ABC transporter, membrane protein KpsM.
  
  
 0.650
kpsE
Capsular polysaccharide ABC transporter, inner membrane protein KpsE.
  
  
 0.635
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.