STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaLPutative colanic acid biosynthesis glycosyltransferase. (410 aa)    
Predicted Functional Partners:
wzxC
Lipopolysaccharide biosynthesis protein.
 
  
 0.928
wcaK
Colanic acid biosynthesis protein.
 
  
 0.867
CED70269.1
Lipopolysaccharide biosynthesis protein, glucosyltransferase.
 
  
 0.861
CED70267.1
Putative glycosyl transferase.
 
     0.822
CED70268.1
Lipopolysaccharide biosynthesis protein, glucosyltransferase.
  
  
 0.797
wzy
Putative polysaccharide polymerase.
       0.773
wzz
Lipopolysaccharide biosynthesis protein, chain length determinant.
  
  
 0.738
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.643
wbfF
Periplasmic polysaccharide export protein.
  
  
 0.619
CED57806.1
Glycosyltransferase.
  
     0.587
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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