STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
CED70269.1Lipopolysaccharide biosynthesis protein, glucosyltransferase. (262 aa)    
Predicted Functional Partners:
wcaL
Putative colanic acid biosynthesis glycosyltransferase.
 
  
 0.861
CED70267.1
Putative glycosyl transferase.
 
  
 0.858
wzxC
Lipopolysaccharide biosynthesis protein.
 
  
 0.848
wcaK
Colanic acid biosynthesis protein.
  
  
 0.795
CED70268.1
Lipopolysaccharide biosynthesis protein, glucosyltransferase.
  
  
 0.790
wzy
Putative polysaccharide polymerase.
       0.773
wzz
Lipopolysaccharide biosynthesis protein, chain length determinant.
  
  
 0.741
CED71329.1
Putative glycosyl transferase, family 2.
  
     0.676
wbfF
Periplasmic polysaccharide export protein.
  
  
 0.665
CED70292.1
Putative glycosyl transferase, family 2.
  
     0.655
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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