STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70281.1General secretion pathway protein D. (709 aa)    
Predicted Functional Partners:
CED70271.1
General secretion pathway protein G.
 
  
 0.937
epsD
General secretion pathway protein D.
  
  
 
0.928
epsC
General secretion pathway protein C.
  
 
 0.907
CED70277.1
General secretion pathway protein K.
 
   
 0.906
xpsE
General secretion pathway protein E.
 
  
 0.884
CED70273.1
General secretion pathway protein F.
 
  
 0.882
epsG
General secretion pathway protein G.
 
  
 0.787
CED70278.1
Putative general secretion pathway protein; No significant database matches.
       0.783
CED70275.1
Putative general secretion pathway protein; No significant database matches.
       0.773
CED70276.1
Putative uncharacterized general secretion pathway protein.
       0.773
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.