STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsDCapsular polysaccharide transport protein KpsD. (566 aa)    
Predicted Functional Partners:
kpsM
Capsular polysaccharide ABC transporter, membrane protein KpsM.
 
  
 0.968
kpsE
Capsular polysaccharide ABC transporter, inner membrane protein KpsE.
 
  
 0.964
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT.
 
  
 0.960
CED57810.1
Putative chain length determinant protein.
 
 
 0.816
CED70309.1
Putative glycosyl transferase, family 2.
 
  
 0.815
wzz
Lipopolysaccharide biosynthesis protein, chain length determinant.
  
 
 0.778
CED70284.1
Putative lipoprotein.
       0.752
CED70295.1
Putative glycosyl transferase, family 2.
 
  
 0.663
CED70315.1
Putative glycosyl transferase, family 2.
 
  
 0.625
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
     
 0.577
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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