STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kpsMCapsular polysaccharide ABC transporter, membrane protein KpsM. (261 aa)    
Predicted Functional Partners:
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT.
 
 0.999
kpsE
Capsular polysaccharide ABC transporter, inner membrane protein KpsE.
 
 
 0.998
kpsD
Capsular polysaccharide transport protein KpsD.
 
  
 0.968
CED70309.1
Putative glycosyl transferase, family 2.
 
  
 0.947
CED70295.1
Putative glycosyl transferase, family 2.
 
  
 0.803
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
   
 0.791
CED70315.1
Putative glycosyl transferase, family 2.
 
  
 0.785
CED70316.1
Putative uncharacterized protein; No significant database matches.
 
  
 0.761
CED57801.1
Polysaccharide biosynthesis/export protein.
 
  
 0.727
CED70291.1
Putative rhamnosyl transferase.
  
  
 0.674
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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