STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsECapsular polysaccharide ABC transporter, inner membrane protein KpsE. (478 aa)    
Predicted Functional Partners:
kpsM
Capsular polysaccharide ABC transporter, membrane protein KpsM.
 
 
 0.998
kpsT
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT.
 
 
 0.998
kpsD
Capsular polysaccharide transport protein KpsD.
 
  
 0.964
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.705
CED57801.1
Polysaccharide biosynthesis/export protein.
 
  
 0.700
CED70316.1
Putative uncharacterized protein; No significant database matches.
 
    0.688
wbfF
Periplasmic polysaccharide export protein.
  
  
 0.635
CED70309.1
Putative glycosyl transferase, family 2.
 
  
 0.620
CED70257.1
Putative exported protein.
  
  
 0.615
CED70284.1
Putative lipoprotein.
       0.596
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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