STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
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Coexpression
Experiments
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[Homology]
Score
CED70310.1Putative glycosyl transferase, family 2. (482 aa)    
Predicted Functional Partners:
CED70311.1
Putative glycosyl transferase, family 1.
 
  
 0.926
CED70312.1
Putative uncharacterized protein; No significant database matches.
 
     0.836
CED70315.1
Putative glycosyl transferase, family 2.
 
   
0.787
CED70309.1
Putative glycosyl transferase, family 2.
 
  
0.778
CED70293.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.746
CED70316.1
Putative uncharacterized protein; No significant database matches.
 
  
 0.740
rmlC
dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.724
CED70313.1
Putative phosphorylcholine metabolizing protein.
  
  
 0.708
CED70314.1
Putative cytidylyltransferase.
       0.706
CED70317.1
Transporter, citrate transporter family.
       0.696
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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