STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED70313.1Putative phosphorylcholine metabolizing protein. (447 aa)    
Predicted Functional Partners:
CED70314.1
Putative cytidylyltransferase.
 
     0.829
CED70315.1
Putative glycosyl transferase, family 2.
  
  
 0.795
CED70316.1
Putative uncharacterized protein; No significant database matches.
     
 0.770
CED70317.1
Transporter, citrate transporter family.
       0.767
CED70310.1
Putative glycosyl transferase, family 2.
  
  
 0.708
CED70311.1
Putative glycosyl transferase, family 1.
     
 0.701
CED70312.1
Putative uncharacterized protein; No significant database matches.
       0.697
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.690
cysD
Sulfate adenylyltransferase subunit 2.
     
 0.649
ubiB
Probable ubiquinone biosynthesis protein UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 
 0.498
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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