STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CED70314.1Putative cytidylyltransferase. (133 aa)    
Predicted Functional Partners:
CED70313.1
Putative phosphorylcholine metabolizing protein.
 
     0.829
CED70315.1
Putative glycosyl transferase, family 2.
     
 0.812
CED70316.1
Putative uncharacterized protein; No significant database matches.
     
 0.777
CED70317.1
Transporter, citrate transporter family.
       0.773
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.722
CED70310.1
Putative glycosyl transferase, family 2.
       0.706
CED70311.1
Putative glycosyl transferase, family 1.
     
 0.699
CED70312.1
Putative uncharacterized protein; No significant database matches.
       0.692
cysD
Sulfate adenylyltransferase subunit 2.
     
 0.663
CED70309.1
Putative glycosyl transferase, family 2.
  
  
 0.662
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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