STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtlRMannitol operon repressor (mannitol repressor protein). (176 aa)    
Predicted Functional Partners:
mtlA
PTS system, mannitol-specific EIICBA component.
 
   
 0.841
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
 
  
 0.839
CED70595.1
Peripheral membrane protein.
  
     0.759
ptsH
Phosphocarrier protein Hpr, histidine-containing protein (PTS system).
    
   0.750
CED70787.1
Lipoprotein.
  
     0.746
CED70734.1
Putative uncharacterized protein; Belongs to the UPF0253 family.
  
     0.709
CED72613.1
Putative membrane protein, AsmA family.
  
     0.698
lapA
Inner membrane protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.677
ompU
Major outer membrane protein OmpU.
  
     0.670
mukE
Chromosome partition protein MukE; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.667
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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