STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED70375.1Putative membrane protein. (61 aa)    
Predicted Functional Partners:
uspB
Universal stress protein B.
  
     0.747
nlpB
Lipoprotein 34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.722
CED72084.1
Inner membrane protein.
  
     0.714
CED70899.1
Putative uncharacterized protein.
  
     0.709
CED72420.1
Opacity-associated protein A.
  
     0.677
alaE
Membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.636
CED72613.1
Putative membrane protein, AsmA family.
  
     0.633
CED72242.1
Putative uncharacterized protein.
  
     0.625
CED71987.1
Putative uncharacterized protein.
  
     0.624
CED72398.1
Putative exported protein.
  
     0.621
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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