STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilPFimbrial assembly protein PilP. (173 aa)    
Predicted Functional Partners:
pilO
Fimbrial assembly protein PilO.
 
 
 0.996
pilN
Fimbrial assembly protein PilN.
 
 
 0.995
pilQ
Fimbrial assembly protein PilQ precursor.
 
 
 0.992
pilM
Fimbrial assembly protein PilM.
 
 
 0.982
CED72657.1
Putative cell wall degradation enzyme.
 
 
   0.913
mshI
Type IV pilus, MSHA biogenesis protein MshI.
 
 
 0.896
CED70696.1
Putative type IV pilus biogenesis/stability protein PilW.
 
   
 0.777
CED70644.1
Membrane protein.
  
  
 0.710
mrcA
Penicillin-binding protein 1A.
       0.608
pilC
Type IV pilus assembly protein PilC.
    
 
 0.527
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.