STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
leuOHTH-type transcriptional regulator LeuO; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
dsdC
HTH-type transcriptional regulator DsdC; Belongs to the LysR transcriptional regulatory family.
  
     0.653
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
      
 0.618
CED57864.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.580
CED56742.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.554
CED70948.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.545
CED56726.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.533
aphB
Transcriptional regulator AphB; Belongs to the LysR transcriptional regulatory family.
  
     0.524
htpG
Chaperone protein HtpG (heat shock protein HtpG); Molecular chaperone. Has ATPase activity.
      
 0.521
CED71411.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.520
CED57879.1
HTH-type transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.516
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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