STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType IV pilus assembly protein PilC. (412 aa)    
Predicted Functional Partners:
pilB
Type IV pilus assembly protein PilB.
 
 
 0.984
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.954
xpsE
General secretion pathway protein E.
 
 
 0.948
epsE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.948
pilA
Type IV pilin PilA; Belongs to the N-Me-Phe pilin family.
 
    0.912
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
 
  
 0.805
pilU
Twitching motility protein PilU, type II/IV secretion system protein.
 
   
 0.796
pilQ
Fimbrial assembly protein PilQ precursor.
 
 
 
 0.759
CED57414.1
Competence protein.
 
  
 0.757
pilM
Fimbrial assembly protein PilM.
 
 
 
 0.706
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.