STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilCType IV pilus assembly protein PilC. (412 aa)    
Predicted Functional Partners:
pilB
Type IV pilus assembly protein PilB.
 
 
 0.984
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.980
xpsE
General secretion pathway protein E.
 
 
 0.946
epsE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.946
pilA
Type IV pilin PilA; Belongs to the N-Me-Phe pilin family.
 
  
 0.924
pilQ
Fimbrial assembly protein PilQ precursor.
 
 
 
 0.877
pilM
Fimbrial assembly protein PilM.
 
 
 
 0.855
pilT
Twitching mobility protein PilT, type II/IV secretion system protein.
 
  
 0.814
pilO
Fimbrial assembly protein PilO.
 
 
 
 0.804
pilU
Twitching motility protein PilU, type II/IV secretion system protein.
 
   
 0.804
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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