STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chbPChitobiose phosphorylase (glycosyl transferase). (801 aa)    
Predicted Functional Partners:
chiA
Chitinase.
  
  
 0.943
CED70541.1
Phosphoglucomutase/phosphomannomutase.
 
   
 0.873
CED70544.1
Glucosamine kinase.
 
  
  0.861
exoI
Beta-hexosaminidase (beta-N-acetylglucosaminidase).
 
   
 0.793
CED70545.1
Putative endochitinase.
 
     0.756
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
    0.678
CED70548.1
(GlcNAc)2 ABC transporter, permease.
 
     0.668
CED70550.1
(GlcNAc)2 ABC transporter, substrate-binding protein.
 
   
 0.606
CED70546.1
(GlcNAc)2 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.599
parE
DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.561
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.