STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoIBeta-hexosaminidase (beta-N-acetylglucosaminidase). (634 aa)    
Predicted Functional Partners:
chiA
Chitinase.
 
  
 0.969
CED57707.1
PTS system, sucrose-specific EIIBC component.
  
  
 0.959
CED70545.1
Putative endochitinase.
 
  
  0.938
CED70136.1
Putative beta-N-acetylhexosaminidase.
  
  
 
0.927
chb
N,N'-diacetylchitobiase (chitobiase).
  
  
 
0.926
nagZ
Beta-hexosaminidase (beta-N-acetylhexosaminidase); Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.915
CED56964.1
Alpha-galactosidase.
  
  
 0.914
nagE-2
PTS permease for N-acetylglucosamine and glucose.
 
  
 0.878
CED70544.1
Glucosamine kinase.
 
     0.863
treB
PTS system, trehalose-specific EIIBC component.
  
  
 0.862
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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