STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
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[Homology]
Score
CED70545.1Putative endochitinase. (572 aa)    
Predicted Functional Partners:
exoI
Beta-hexosaminidase (beta-N-acetylglucosaminidase).
 
  
  0.938
CED70544.1
Glucosamine kinase.
 
     0.914
chb
N,N'-diacetylchitobiase (chitobiase).
 
  
  0.829
CED70550.1
(GlcNAc)2 ABC transporter, substrate-binding protein.
 
     0.819
CED71336.1
Chitinase.
  
     0.771
CED70546.1
(GlcNAc)2 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.767
CED70549.1
(GlcNAc)2 ABC transporter, permease.
 
     0.760
chbP
Chitobiose phosphorylase (glycosyl transferase).
 
     0.756
CED70548.1
(GlcNAc)2 ABC transporter, permease.
 
     0.756
chiA
Chitinase.
  
     0.736
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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