STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase. (468 aa)    
Predicted Functional Partners:
dacA
Penicillin-binding protein 5 precursor (D-alanyl-D-alanin carboxypeptidase fraction A); Belongs to the peptidase S11 family.
     
 0.933
CED56785.1
Ankyrin repeat containing protein.
   
 
 0.735
CED71377.1
Putative microcin immunity protein MccF.
 
  
 0.727
ompU
Major outer membrane protein OmpU.
       0.567
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.517
CED72626.1
Putative thioredoxin.
  
     0.419
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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